Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015807090.1_cds_XP_016494681.1_9070
CDS Infomation

[gene=LOC107813877] [db_xref=GeneID:107813877] [protein=E3 UFM1-protein ligase 1 homolog] [protein_id=XP_016494681.1] [location=join(38266..38439,39245..39556,39640..39906,40019..40066,40874..40939,41024..41127,42885..42978,43234..43290,43439..43862,43950..44119)] [gbkey=CDS]
Sequence

ATGGATGAAGAATTACTAGAATTACAAAGACAGTTCGAATTCGCACAACAAGCAAAATCC
ACCGTACGATTATCAGAACGAAACGTCGTTGAATTAGTGCAGAAACTTCATCAGCTTCAA
ATCATTGACTTTGACCTCCTCCATACAATCACCGGCAAAGAATACATTACACCTGAGCAA
TTGAGGAATGAAGTTGTGGCTGAGATCAACAGACTAGGACGTATTTCCTTGATCGATTTA
TCTGACAGTACCGGGGTAGACTTGTACCATGTGGAGAAACAAGCCCAGTATGTAGTATCC
CATGACTCATCCCTCATGTTAATTAATGGTGAAATTATCTCGAATACTTATTGGGATACA
GCAGCTGAAGAAATCAATGAAAGACTTCAAGAATGTAGCCAAATTGCCATTGCTGAAATA
GCAGGACAACTACAAGTTGGGTCGGAATTAGTAGTCTCTATTCTTGAACCTCGTCTTGGG
ACTTTGGTAAAAGGTAGGCTTGAAGGTGGGCAATTGTATACACCAGCCTATGTTGCTCGT
GTAAATGCAATGGTACGTGGTGCAGCTAGGGGTATTTTTGTTCCTATGAACACGTCAGCG
TTATGGAACACCTTGCAGAGTTTACTGCAAGAGATGGACGGAGCTATTGGTGTTGCTGTT
GACGCCTCATTTTTCCAGTCATTGTTTAACGGCTTAGTCAAAGAAGGCGAGATTCTCGGC
TCTCTTCGTGCAGGAGTTCATTGGACACCTTCCGTTTTTGCCATGGCTCAAAAGGACTGT
GTAGATTCCTTCTTTTCGCAGAATTCTTTTATTACTTATGATTCTATGCAAAAACTTGGG
ATTCCGCAACCTTCTCAATTCCTGCAGTCCAGATATCCCGATGGTATATCTCTGGATACT
GCATATGCTCACCCTTCAATGATTGAGATGTTGGATGCCGCCGTTGAGGATGCCATAGAA
CGTAATAGCTGGATTGATTCGCTTTCAGTTTTACCCGCTTCCTTAGGTAGCCAAGATGCA
TTTAAGATTCTGTCACTATGTCCATCGGTTCAAGCAGCACAAAAGTCGAATAGAGCGCTT
ATCTTGGGAGATTCATATATTTTTAGCAATGGGTTTGTCAAGGATCTGTTTGATCGGATA
GAAAAGGAGATGGAAACATTAAGCGTTCCTGGGCTTGCCGGTGCTGGGCCTGTAGATGAG
TTTCGTGTTACTAAAGATGCTAAAGTTGGATATGACTCCAGTGAAGTAAATGAAACAAGA
AGTGATGCCGGTATCAGCAAACAGGCCTCGGAGAAAGGATCTAAGAAGAAAAAAGGAAAA
TCATCTGGGAATTCTAAGATGGAGCAAGCTGAAACAGGGGTAGATAACCAGGAATCTGCC
CCTAGTAAATCTAAGAAAGGTCAGAAGAAAGGTAAGGTGTCATCTGGATCACAAGCAGCA
GACTCAAACTCAGGTGCTAGAAAGAATGAGGATAGCCTTGGCGTTATTTCAGAAGAATGG
GTAATTCAGAAGATTACATCTCTCAATCCTGACTTTGAAGAACAAGGTCTGGACGATCCA
GAGATGATTCTTTTGCCTTTAGCAAGACATTTGAGACCGTTGCTCGTCAATTCATTGAAG
GAAAGAAGAAAGGCTGCCTTCACCGAAAATGCCCAGAAAATGAAAAAGCTACTTGATAAT
TTGCAAAAGAAACTTGATGAGGTAAGTTATGGATAG

Peptide Sequence

PEP ID

XP_016494681.1
PEP Infomation

PREDICTED: E3 UFM1-protein ligase 1 homolog [Nicotiana tabacum]
Sequence

MDEELLELQRQFEFAQQAKSTVRLSERNVVELVQKLHQLQIIDFDLLHTITGKEYITPEQ
LRNEVVAEINRLGRISLIDLSDSTGVDLYHVEKQAQYVVSHDSSLMLINGEIISNTYWDT
AAEEINERLQECSQIAIAEIAGQLQVGSELVVSILEPRLGTLVKGRLEGGQLYTPAYVAR
VNAMVRGAARGIFVPMNTSALWNTLQSLLQEMDGAIGVAVDASFFQSLFNGLVKEGEILG
SLRAGVHWTPSVFAMAQKDCVDSFFSQNSFITYDSMQKLGIPQPSQFLQSRYPDGISLDT
AYAHPSMIEMLDAAVEDAIERNSWIDSLSVLPASLGSQDAFKILSLCPSVQAAQKSNRAL
ILGDSYIFSNGFVKDLFDRIEKEMETLSVPGLAGAGPVDEFRVTKDAKVGYDSSEVNETR
SDAGISKQASEKGSKKKKGKSSGNSKMEQAETGVDNQESAPSKSKKGQKKGKVSSGSQAA
DSNSGARKNEDSLGVISEEWVIQKITSLNPDFEEQGLDDPEMILLPLARHLRPLLVNSLK
ERRKAAFTENAQKMKKLLDNLQKKLDEVSYG

Transcript Sequence

Gene sequence data has not been registered.